Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1468516 chr14:74360920 G/A 1.04E-5 176 25.4 28.3 10.43 KM Plot
PCPG rs146888609 chr7:105147587 G/A 5.04E-5 178 20.17 28.95 2.28 KM Plot
PCPG rs146968304 chr9:86480677 T/G 0.000126 175 26.57 24.7 14.47 KM Plot
PCPG rs147065775 chr7:36162418 A/C 0.000461 176 25.87 24.23 14.37 KM Plot
PCPG rs147140565 chr3:53086857 GA/G 7.98E-6 173 25 30.87 11.78 KM Plot
PCPG rs147234566 chr3:80451022 TG/T 0.000182 171 25.4 25.92 22.52 KM Plot
PCPG rs147291849 chr16:88634271 G/A 0.000109 171 25.53 23.53 14.47 KM Plot
PCPG rs147366888 chr8:6733391 AAAG/A 9.94E-6 173 13.27 19 27.3 KM Plot
PCPG rs147426766 chr8:121518863 CTG/C 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs147521875 chr7:158872620 T/A 0 175 25.4 41.8 3.17 KM Plot
PCPG rs147792551 chr16:89787968 C/G 1.11E-16 172 25.87 20.2 3.17 KM Plot
PCPG rs147899617 chr16:90080352 C/A 1.27E-8 173 25.67 20.28 6.62 KM Plot
PCPG rs148009429 chr16:90154346 A/G 8.74E-9 176 25.87 20.2 6.62 KM Plot
PCPG rs148073945 chr10:69830250 C/T 0 173 25.87 21.45 2.28 KM Plot
PCPG rs148136030 chr7:105160628 G/C 5.12E-5 178 20.2 29.43 2.28 KM Plot